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( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of <t>SEMA3A-NRP1</t> and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.
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( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of <t>SEMA3A-NRP1</t> and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.
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( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of <t>SEMA3A-NRP1</t> and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.
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( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of <t>SEMA3A-NRP1</t> and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.
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( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of <t>SEMA3A-NRP1</t> and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.
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Violin plot comparing plasma <t>Sema3A</t> levels across diagnostic categories. ( A ) Patients vs HCs. ( B ) Acute phase vs subacute phase in RSSI patients. ( C ) Subacute phase vs HCs. ( D ) CI vs NCI subgroup in patients. ( E ) High-load vs low-load CSVD imaging score subgroups. Abbreviations: HC: healthy control; CI: cognitive impairment; NCI: non-cognitive impairment; CSVD: cerebral small vessel disease. *** P < 0.001.ns: not significant.
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Image Search Results


( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of SEMA3A-NRP1 and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.

Journal: eLife

Article Title: Human receptive endometrial assembloid for deciphering the implantation window

doi: 10.7554/eLife.90729

Figure Lengend Snippet: ( A ) GSEA between the secretory (SEC) and window of implantation (WOI) groups for proliferative epithelium. ( B ) The single-cell pseudotime trajectory of proliferative epithelium, stromal cell, EMT-derived cell and stem-derived epithelium. Cells start at proliferative epithelium and progress to EMT-derived cell. There are seven major states over pseudotime. The black spot indicates the differentiation node between states 4, 5 and 6, indicating the direction from proliferative epithelium to EMT-derived cell. Arrows indicate the direction of the pseudotime trajectory. ( C ) The horizontal axis is the pseudotime point, and the vertical axis is the gene expression level. The solid line represents states 1, 2, 4, and 5 corresponding to Fig. S4B. Different colors represent samples in the CTRL, SEC, and WOI groups. ( D ) Heatmap of genes at the branch node regulating differentiation into EMT-derived cell and stem-derived epithelium. The horizontal axis is the pseudo-time point (the pseudo-time point gradually increases from the middle to both sides). The vertical axis is the gene expression level, representing two differential directions on the left and right sides. Clusters represent the gene sets with a similar branch gene expression trend. Different colors represent the level of gene expression. ( E–F ) Dot plots demonstrating the Cellphone DB analysis of relevant receptors and ligands of EMT-derived cell ( E ) or stromal cell ( F ) with other cell types. The size of the dot represents the level of significance. The color of the dot indicates the mean of the average expression level of interacting molecule 1 in EMT-derived cells ( E ) or stromal cells ( F ) and molecule 2 in other cell types. ( G ) Proximity ligation assay (PLA) validating the interactions of SEMA3A-NRP1 and CD46-JAG1 in the CTRL, SEC and WOI assembloids. Red signals the interaction of two proteins. Nuclei were counterstained with DAPI. Scale bar = 20 μm.

Article Snippet: Antibody , SEMA3A antibody (C-1) (Mouse monoclonal) , Santa Cruz , Cat#: sc-74555 RRID: AB_2185394 , PLA (1:50).

Techniques: Single Cell, Derivative Assay, Gene Expression, Expressing, Proximity Ligation Assay

Violin plot comparing plasma Sema3A levels across diagnostic categories. ( A ) Patients vs HCs. ( B ) Acute phase vs subacute phase in RSSI patients. ( C ) Subacute phase vs HCs. ( D ) CI vs NCI subgroup in patients. ( E ) High-load vs low-load CSVD imaging score subgroups. Abbreviations: HC: healthy control; CI: cognitive impairment; NCI: non-cognitive impairment; CSVD: cerebral small vessel disease. *** P < 0.001.ns: not significant.

Journal: International Journal of General Medicine

Article Title: Plasma Semaphorin 3A as a Potential Biomarker for Cognitive Impairment in Cerebral Small Vessel Disease

doi: 10.2147/IJGM.S554075

Figure Lengend Snippet: Violin plot comparing plasma Sema3A levels across diagnostic categories. ( A ) Patients vs HCs. ( B ) Acute phase vs subacute phase in RSSI patients. ( C ) Subacute phase vs HCs. ( D ) CI vs NCI subgroup in patients. ( E ) High-load vs low-load CSVD imaging score subgroups. Abbreviations: HC: healthy control; CI: cognitive impairment; NCI: non-cognitive impairment; CSVD: cerebral small vessel disease. *** P < 0.001.ns: not significant.

Article Snippet: Plasma Sema3A concentrations were measured using a double antibody sandwich enzyme-linked immunosorbent assay (ELISA, Human SEMA3A ELISA Kit, Elabscience, Wuhan, China).

Techniques: Clinical Proteomics, Diagnostic Assay, Imaging, Control

Correlation analysis of plasma Sema3A levels in the acute phase. ( A ) Correlation between plasma Sema3A levels and MoCA score in RSSI patients. ( B ) Correlation between plasma Sema3A levels and total burden score in RSSI patients.

Journal: International Journal of General Medicine

Article Title: Plasma Semaphorin 3A as a Potential Biomarker for Cognitive Impairment in Cerebral Small Vessel Disease

doi: 10.2147/IJGM.S554075

Figure Lengend Snippet: Correlation analysis of plasma Sema3A levels in the acute phase. ( A ) Correlation between plasma Sema3A levels and MoCA score in RSSI patients. ( B ) Correlation between plasma Sema3A levels and total burden score in RSSI patients.

Article Snippet: Plasma Sema3A concentrations were measured using a double antibody sandwich enzyme-linked immunosorbent assay (ELISA, Human SEMA3A ELISA Kit, Elabscience, Wuhan, China).

Techniques: Clinical Proteomics

ROC analysis of plasma Sema3A levels. ( A ) ROC curve comparing RSSI patients and HCs. ( B ) ROC curve comparing CI and NCI subgroups in RSSI patients.

Journal: International Journal of General Medicine

Article Title: Plasma Semaphorin 3A as a Potential Biomarker for Cognitive Impairment in Cerebral Small Vessel Disease

doi: 10.2147/IJGM.S554075

Figure Lengend Snippet: ROC analysis of plasma Sema3A levels. ( A ) ROC curve comparing RSSI patients and HCs. ( B ) ROC curve comparing CI and NCI subgroups in RSSI patients.

Article Snippet: Plasma Sema3A concentrations were measured using a double antibody sandwich enzyme-linked immunosorbent assay (ELISA, Human SEMA3A ELISA Kit, Elabscience, Wuhan, China).

Techniques: Clinical Proteomics

Mediation analysis of plasma Sema3A, CSVD total burden score, and cognitive function. ( A ) Conceptual diagram of mediation analysis with single mediator (M). Total effect of X on Y (c) = indirect effect through M (a × b) + direct effect (c’). ( B ) Sema3A (X), total burden score (M), MoCA (Y). ( C ) Sema3A (X), LI (M), MoCA (Y). ( D ) Sema3A (X), CMBs (M), MoCA (Y). ( E ) Sema3A (X), EPVs (Potter score) (M), MoCA (Y). ( F ) Sema3A (X), WMH (Fazekas score) (M), MoCA (Y). Covariates: age, sex, education.***P < 0.001.

Journal: International Journal of General Medicine

Article Title: Plasma Semaphorin 3A as a Potential Biomarker for Cognitive Impairment in Cerebral Small Vessel Disease

doi: 10.2147/IJGM.S554075

Figure Lengend Snippet: Mediation analysis of plasma Sema3A, CSVD total burden score, and cognitive function. ( A ) Conceptual diagram of mediation analysis with single mediator (M). Total effect of X on Y (c) = indirect effect through M (a × b) + direct effect (c’). ( B ) Sema3A (X), total burden score (M), MoCA (Y). ( C ) Sema3A (X), LI (M), MoCA (Y). ( D ) Sema3A (X), CMBs (M), MoCA (Y). ( E ) Sema3A (X), EPVs (Potter score) (M), MoCA (Y). ( F ) Sema3A (X), WMH (Fazekas score) (M), MoCA (Y). Covariates: age, sex, education.***P < 0.001.

Article Snippet: Plasma Sema3A concentrations were measured using a double antibody sandwich enzyme-linked immunosorbent assay (ELISA, Human SEMA3A ELISA Kit, Elabscience, Wuhan, China).

Techniques: Clinical Proteomics